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Cistr chondrogenesis associated transcript [ Mus musculus (house mouse) ]

Gene ID: 102216269, updated on 2-Nov-2024

Summary

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Official Symbol
Cistrprovided by MGI
Official Full Name
chondrogenesis associated transcriptprovided by MGI
Primary source
MGI:MGI:5621321
See related
AllianceGenome:MGI:5621321
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm38436; Cistr-act
Summary
Orthologous to human CISTR (chondrogenesis-associated transcript). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human all
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Genomic context

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See Cistr in Genome Data Viewer
Location:
15 F3; 15
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (102654876..102655344, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (102746441..102746909, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene calcium binding and coiled coil domain 1 Neighboring gene STARR-positive B cell enhancer ABC_E2453 Neighboring gene STARR-positive B cell enhancer ABC_E7424 Neighboring gene predicted gene, 36510 Neighboring gene predicted gene, 36560 Neighboring gene STARR-seq mESC enhancer starr_39859 Neighboring gene homeobox C13 Neighboring gene homeobox C12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A misplaced lncRNA causes brachydactyly in humans. Maass PG, et al. J Clin Invest, 2012 Nov. PMID 23093776, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Other Names

  • chondrogenic regulator lncRNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104334.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AW494227

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    102654876..102655344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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