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IRF1 interferon regulatory factor 1 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102447273, updated on 10-Mar-2024

Summary

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Gene symbol
IRF1
Gene description
interferon regulatory factor 1
See related
Ensembl:ENSPSIG00000010399
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005856644.1 (212791..222958, complement)

NW_005856644.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 5 Neighboring gene RAD50 double strand break repair protein Neighboring gene kinesin family member 3A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005856644 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global characterization and expression analysis of interferon regulatory factors in response to Aeromonas hydrophila challenge in Chinese soft-shelled turtle (Pelodiscus sinensis). Liu T, et al. Fish Shellfish Immunol, 2019 Sep. PMID 31299462
  2. IFN-γ in turtle: conservation in sequence and signalling and role in inhibiting iridovirus replication in Chinese soft-shelled turtle Pelodiscus sinensis. Fu JP, et al. Dev Comp Immunol, 2014 Mar. PMID 24239708

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon regulatory factor 1
Names
IRF1 encodes interferon regulatory factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001317050.1 → NP_001303979.1  interferon regulatory factor 1

    Status: PROVISIONAL

    Source sequence(s)
    KF623110
    UniProtKB/TrEMBL
    V5RF14
    Conserved Domains (1) summary
    pfam00605
    Location:7 → 112
    IRF; Interferon regulatory factor transcription factor

RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005856644.1 Reference PelSin_1.0 Primary Assembly

    Range
    212791..222958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006128514.3 → XP_006128576.1  interferon regulatory factor 1 isoform X1

    UniProtKB/TrEMBL
    K7FU68
    Related
    ENSPSIP00000011578.1, ENSPSIT00000011635.1
    Conserved Domains (1) summary
    pfam00605
    Location:7 → 112
    IRF; Interferon regulatory factor transcription factor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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