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TBXT T-box transcription factor T [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102456935, updated on 10-Mar-2024

Summary

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Gene symbol
TBXT
Gene description
T-box transcription factor T
See related
Ensembl:ENSPSIG00000005649
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Also known as
brachyury
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005871033.1 (127394..138890)

NW_005871033.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102456693 Neighboring gene uncharacterized LOC102456525 Neighboring gene phosphodiesterase 10A Neighboring gene uncharacterized LOC112544033 Neighboring gene chromosome unknown C6orf118 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005871033 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Decoupling of amniote gastrulation and streak formation reveals a morphogenetic unity in vertebrate mesoderm induction. Alev C, et al. Development, 2013 Jul. PMID 23698348

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mesoderm formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in somitogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
brachyury protein
Names
T brachyury transcription factor
T, brachyury homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005871033.1 Reference PelSin_1.0 Primary Assembly

    Range
    127394..138890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006139112.3 → XP_006139174.1  brachyury protein isoform X3

    Conserved Domains (1) summary
    cd00182
    Location:42 → 223
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...

  2. XM_006139114.2 → XP_006139176.1  brachyury protein isoform X4

    Conserved Domains (1) summary
    cl00145
    Location:42 → 178
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...

  3. XM_025179492.1 → XP_025035277.1  brachyury protein isoform X5

    Conserved Domains (1) summary
    pfam00907
    Location:44 → 174
    T-box

  4. XM_006139110.2 → XP_006139172.1  brachyury protein isoform X1

    UniProtKB/TrEMBL
    K7FDN2
    Related
    ENSPSIP00000006142.1, ENSPSIT00000006179.1
    Conserved Domains (1) summary
    cd00182
    Location:42 → 223
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...

  5. XM_025179491.1 → XP_025035276.1  brachyury protein isoform X2

    Conserved Domains (1) summary
    pfam00907
    Location:44 → 219
    T-box
Nucleotide Protein
Heading Accession and Version

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