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MYF5 myogenic factor 5 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102459218, updated on 10-Mar-2024

Summary

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Gene symbol
MYF5
Gene description
myogenic factor 5
See related
Ensembl:ENSPSIG00000012000
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Also known as
myf-5
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005853878.1 (2394684..2400272, complement)

NW_005853878.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase short chain family member 3 Neighboring gene lin-7 homolog A, crumbs cell polarity complex component Neighboring gene myogenic factor 6 Neighboring gene protein tyrosine phosphatase receptor type Q

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005853878 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unique features of Myf-5 in turtles: nucleotide deletion, alternative splicing, and unusual expression pattern. Ohya YK, et al. Evol Dev, 2006 Sep-Oct. PMID 16925677

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in muscle organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of myoblast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myogenic factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286906.1 → NP_001273835.1  myogenic factor 5

    See identical proteins and their annotated locations for NP_001273835.1

    Status: PROVISIONAL

    Source sequence(s)
    AB247184
    UniProtKB/TrEMBL
    Q0WYJ6, Q0WYN5
    Related
    ENSPSIP00000013363.1, ENSPSIT00000013426.1
    Conserved Domains (3) summary
    smart00520
    Location:1 → 88
    BASIC; Basic domain in HLH proteins of MYOD family
    pfam00010
    Location:84 → 135
    HLH; Helix-loop-helix DNA-binding domain
    pfam12232
    Location:143 → 212
    Myf5; Myogenic determination factor 5

RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005853878.1 Reference PelSin_1.0 Primary Assembly

    Range
    2394684..2400272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006118481.3 → XP_006118543.1  myogenic factor 5 isoform X1

    Conserved Domains (3) summary
    smart00520
    Location:1 → 88
    BASIC; Basic domain in HLH proteins of MYOD family
    pfam00010
    Location:84 → 135
    HLH; Helix-loop-helix DNA-binding domain
    pfam12232
    Location:143 → 176
    Myf5; Myogenic determination factor 5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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