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WNT5B Wnt family member 5B [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102462233, updated on 10-Mar-2024

Summary

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Gene symbol
WNT5B
Gene description
Wnt family member 5B
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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See WNT5B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005858879.1 (2622914..2644643)

NW_005858879.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112547801 Neighboring gene F-box and leucine rich repeat protein 14 Neighboring gene adiponectin receptor 2 Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 4 Neighboring gene leucine rich repeats and transmembrane domains 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005858879 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan. Wang Z, et al. Nat Genet, 2013 Jun. PMID 23624526, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables frizzled binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Wnt-5b
Names
wingless-type MMTV integration site family member 5b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005858879.1 Reference PelSin_1.0 Primary Assembly

    Range
    2622914..2644643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014579701.2 → XP_014435187.1  protein Wnt-5b

    UniProtKB/TrEMBL
    K7FM62
    Conserved Domains (1) summary
    pfam00110
    Location:54 → 359
    wnt; wnt family
Nucleotide Protein
Heading Accession and Version

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