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PGLYRP2 peptidoglycan recognition protein 2 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102463941, updated on 10-Mar-2024

Summary

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Gene symbol
PGLYRP2
Gene description
peptidoglycan recognition protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005852163.1 (219573..238141)

NW_005852163.1Genomic Context describing neighboring genes Neighboring gene patatin like phospholipase domain containing 6 Neighboring gene neuropathy target esterase-like Neighboring gene zinc finger protein OZF-like Neighboring gene RAS protein activator like 3 Neighboring gene uncharacterized LOC102443451

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005852163 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular and functional identification of a short-type peptidoglycan recognition protein, PGRP-S, in the Chinese soft-shelled turtle Pelodiscus sinensis. Huang L, et al. Dev Comp Immunol, 2021 Apr. PMID 33310083

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Molecular and functional identification of a short-type peptidoglycan recognition protein, PGRP-S, in the Chinese soft-shelled turtle Pelodiscus sinensis.
    Title: Molecular and functional identification of a short-type peptidoglycan recognition protein, PGRP-S, in the Chinese soft-shelled turtle Pelodiscus sinensis.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylmuramoyl-L-alanine amidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptidoglycan binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptidoglycan immune receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to Gram-positive bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in detection of bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidoglycan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylmuramoyl-L-alanine amidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005852163.1 Reference PelSin_1.0 Primary Assembly

    Range
    219573..238141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006112784.3 → XP_006112846.2  N-acetylmuramoyl-L-alanine amidase

    UniProtKB/TrEMBL
    K7F806
    Conserved Domains (1) summary
    smart00701
    Location:389 → 533
    PGRP; Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme
Nucleotide Protein
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