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FBXO38-DT FBXO38 divergent transcript [ Homo sapiens (human) ]

Gene ID: 102546294, updated on 17-Sep-2024

Summary

Official Symbol
FBXO38-DTprovided by HGNC
Official Full Name
FBXO38 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55589
See related
Ensembl:ENSG00000247199 AllianceGenome:HGNC:55589
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See FBXO38-DT in Genome Data Viewer
Location:
5q32
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (148268307..148383850, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (148802821..148918372, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (147647870..147763413, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene CAGE-defined high expression enhancer downstream of SPINK6 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:147609822-147611021 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 16 Neighboring gene MARCO like Neighboring gene serine peptidase inhibitor Kazal type 13 Neighboring gene piggyBac transposable element derived 4 pseudogene 3 Neighboring gene serine peptidase inhibitor Kazal type 7 Neighboring gene serine peptidase inhibitor Kazal type 9 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23363 Neighboring gene F-box protein 38 Neighboring gene PRELI domain containing 3B pseudogene 9 Neighboring gene MPRA-validated peak5528 silencer Neighboring gene uncharacterized LOC107986462 Neighboring gene 5-hydroxytryptamine receptor 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_105057.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011346, AC091948
    Related
    ENST00000501695.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    148268307..148383850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    148802821..148918372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)