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LOC102547955 uncharacterized LOC102547955 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102547955, updated on 17-Aug-2024

Summary

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Symbol
LOC102547955provided by RGD
Full Name
uncharacterized LOC102547955provided by RGD
Primary source
RGD:7723636
See related
AllianceGenome:RGD:7723636
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Spleen (RPKM 20.8), Adrenal (RPKM 20.0) and 9 other tissues See more
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Genomic context

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See LOC102547955 in Genome Data Viewer
Location:
10q31
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (82427357..82474702)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (81930912..81953864)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (84881306..84908038)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene proline rich 15-like Neighboring gene pyridoxamine 5'-phosphate oxidase Neighboring gene Sp2 transcription factor Neighboring gene uncharacterized LOC108352124 Neighboring gene Sp6 transcription factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_190590.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010

  2. NR_190591.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010

  3. NR_190592.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010

  4. NR_190593.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010

  5. NR_190594.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    82427357..82474702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_010055771.1 RNA Sequence

  2. XR_010055764.1 RNA Sequence

  3. XR_010055768.1 RNA Sequence

  4. XR_005490745.2 RNA Sequence

  5. XR_005490743.2 RNA Sequence

  6. XR_005490736.2 RNA Sequence

  7. XR_005490748.2 RNA Sequence

  8. XR_010055776.1 RNA Sequence

  9. XR_010055773.1 RNA Sequence

  10. XR_010055774.1 RNA Sequence

  11. XR_010055767.1 RNA Sequence

  12. XR_005490739.2 RNA Sequence

  13. XR_010055770.1 RNA Sequence

  14. XR_010055760.1 RNA Sequence

  15. XR_010055761.1 RNA Sequence

  16. XR_005490728.2 RNA Sequence

  17. XR_010055769.1 RNA Sequence

  18. XR_010055758.1 RNA Sequence

  19. XR_010055757.1 RNA Sequence

  20. XR_010055772.1 RNA Sequence

  21. XR_010055759.1 RNA Sequence

  22. XR_010055756.1 RNA Sequence

  23. XR_010055765.1 RNA Sequence

  24. XR_010055766.1 RNA Sequence

  25. XR_010055763.1 RNA Sequence

  26. XR_010055762.1 RNA Sequence

  27. XR_010055775.1 RNA Sequence

  28. XR_005490732.2 RNA Sequence

  29. XR_005490735.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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