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LOC102548080 uncharacterized LOC102548080 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102548080, updated on 17-Aug-2024

Summary

Symbol
LOC102548080provided by RGD
Full Name
uncharacterized LOC102548080provided by RGD
Primary source
RGD:7609120
See related
AllianceGenome:RGD:7609120
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Brain (RPKM 28.4), Testes (RPKM 18.8) and 8 other tissues See more
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Genomic context

See LOC102548080 in Genome Data Viewer
Location:
4q42
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (147376966..147444118)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (145820794..145887127)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (144620731..144687704)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene oxytocin receptor Neighboring gene RAD18 E3 ubiquitin protein ligase Neighboring gene SLIT-ROBO Rho GTPase activating protein 3 Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC102548337 Neighboring gene uncharacterized LOC134486622

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    147376966..147444118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_005503819.2 RNA Sequence

  2. XR_010065899.1 RNA Sequence