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LOC102548289 uncharacterized LOC102548289 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102548289, updated on 17-Aug-2024

Summary

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Symbol
LOC102548289provided by RGD
Full Name
uncharacterized LOC102548289provided by RGD
Primary source
RGD:7590823
See related
AllianceGenome:RGD:7590823
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Heart (RPKM 9.7), Muscle (RPKM 8.0) and 6 other tissues See more
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Genomic context

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See LOC102548289 in Genome Data Viewer
Location:
9q21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (40739470..40742861)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (33222662..33247053)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (37254304..37255976)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene PHD finger protein 3 Neighboring gene protein tyrosine phosphatase 4A1 Neighboring gene lengsin, lens protein with glutamine synthetase domain Neighboring gene small nucleolar RNA SNORA17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    40739470..40742861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001839782.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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