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LOC102548370 uncharacterized LOC102548370 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102548370, updated on 17-Aug-2024

Summary

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Symbol
LOC102548370provided by RGD
Full Name
uncharacterized LOC102548370provided by RGD
Primary source
RGD:7636337
See related
AllianceGenome:RGD:7636337
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Testes (RPKM 6.4), Thymus (RPKM 1.9) and 4 other tissues See more
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Genomic context

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See LOC102548370 in Genome Data Viewer
Location:
6q32
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (127617395..127643215, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (121855315..121864621, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (126594055..126602532, complement)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene chromogranin A Neighboring gene inositol-tetrakisphosphate 1-kinase Neighboring gene uncharacterized LOC102548189 Neighboring gene modulator of apoptosis 1 Neighboring gene lysosomal enzyme trafficking factor Neighboring gene GON7 subunit of KEOPS complex

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
keratin-associated protein 5-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    127617395..127643215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063262702.1 → XP_063118772.1  keratin-associated protein 5-1-like

  2. XM_063262701.1 → XP_063118771.1  keratin-associated protein 5-1-like

  3. XM_063262700.1 → XP_063118770.1  keratin-associated protein 5-1-like

Nucleotide Protein Strain
Heading Accession and Version

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