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Cdiptos CDIP transferase, opposite strand [ Rattus norvegicus (Norway rat) ]

Gene ID: 102552638, updated on 2-Nov-2024

Summary

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Official Symbol
Cdiptosprovided by RGD
Official Full Name
CDIP transferase, opposite strandprovided by RGD
Primary source
RGD:7676737
See related
EnsemblRapid:ENSRNOG00000057003 AllianceGenome:RGD:7676737
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
T-enol
Summary
Orthologous to human CDIPTOSP (CDIP transferase opposite strand, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 234.1) See more
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Genomic context

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See Cdiptos in Genome Data Viewer
Location:
1q37
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (191009918..191013551, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (181579385..181583017, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (198405470..198409111, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene aspartate beta-hydroxylase domain containing 1 Neighboring gene seizure related 6 homolog like 2 Neighboring gene CDP-diacylglycerol--inositol 3-phosphatidyltransferase Neighboring gene major vault protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
putative protein T-ENOL
Names
Putative protein T-ENOL
Testicular enolase domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419521.1 → NP_001406450.1  putative protein T-ENOL

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A8I6B525
    Related
    ENSRNOP00000096936.1, ENSRNOT00000084011.3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    191009918..191013551 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063286380.1 → XP_063142450.1  putative protein T-ENOL isoform X2

    UniProtKB/TrEMBL
    A0A8I6GDT7
    Related
    ENSRNOP00000086231.1, ENSRNOT00000111988.2

  2. XM_006230366.5 → XP_006230428.1  putative protein T-ENOL isoform X1

    See identical proteins and their annotated locations for XP_006230428.1

    UniProtKB/TrEMBL
    A0A8I6B525
    Conserved Domains (1) summary
    cl21457
    Location:5 → 59
    TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...

  3. XM_006230365.5 → XP_006230427.1  putative protein T-ENOL isoform X1

    See identical proteins and their annotated locations for XP_006230427.1

    UniProtKB/TrEMBL
    A0A8I6B525
    Conserved Domains (1) summary
    cl21457
    Location:5 → 59
    TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...

  4. XM_006230364.5 → XP_006230426.1  putative protein T-ENOL isoform X1

    See identical proteins and their annotated locations for XP_006230426.1

    UniProtKB/TrEMBL
    A0A8I6B525
    Conserved Domains (1) summary
    cl21457
    Location:5 → 59
    TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DO93.1 GenPept UniProtKB/Swiss-Prot:P0DO93

Gene LinkOut

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