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Ctxnd1 cortexin domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102553298, updated on 17-Aug-2024

Summary

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Symbol
Ctxnd1provided by RGD
Full Name
cortexin domain containing 1provided by RGD
Primary source
RGD:7557291
See related
EnsemblRapid:ENSRNOG00000084604 AllianceGenome:RGD:7557291
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Adrenal (RPKM 85.3) and Brain (RPKM 29.8) See more
Orthologs
human mouse all
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Genomic context

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See Ctxnd1 in Genome Data Viewer
Location:
1q31
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (147904760..147956206)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (138495689..138547105)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (146659395..146706084)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485143 Neighboring gene uncharacterized LOC134485142 Neighboring gene fumarylacetoacetate hydrolase Neighboring gene zinc finger AN1-type containing 6 Neighboring gene RNA, U6 small nuclear 891

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cortexin domain-containing 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    147904760..147956206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063280965.1 → XP_063137035.1  cortexin domain-containing 1 protein

    Related
    ENSRNOP00000111729.1, ENSRNOT00000164253.1

RNA

  1. XR_010063087.1 RNA Sequence

  2. XR_010063089.1 RNA Sequence

  3. XR_010063092.1 RNA Sequence

  4. XR_010063090.1 RNA Sequence

  5. XR_010063088.1 RNA Sequence

  6. XR_010063091.1 RNA Sequence

  7. XR_010063093.1 RNA Sequence

  8. XR_010063086.1 RNA Sequence

  9. XR_010063085.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases
Research Materials