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LOC102554018 uncharacterized LOC102554018 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102554018, updated on 17-Aug-2024

Summary

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Symbol
LOC102554018provided by RGD
Full Name
uncharacterized LOC102554018provided by RGD
Primary source
RGD:7532083
See related
AllianceGenome:RGD:7532083
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Testes (RPKM 7.9), Adrenal (RPKM 0.5) and 1 other tissue See more
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Genomic context

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See LOC102554018 in Genome Data Viewer
Location:
11q11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (43836919..43842564)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (30351035..30356802)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (31263712..31268664)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene exosomal polycystin 1 interacting protein Neighboring gene uncharacterized LOC108352305 Neighboring gene uncharacterized LOC120095612

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    43836919..43842564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_010056251.1 RNA Sequence

  2. XR_010056254.1 RNA Sequence

  3. XR_010056253.1 RNA Sequence

  4. XR_010056256.1 RNA Sequence

  5. XR_010056252.1 RNA Sequence

  6. XR_010056255.1 RNA Sequence

  7. XR_001840458.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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