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Znf16l-ps1 Zinc finger protein 16 like, pseudogene 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102555319, updated on 17-Aug-2024

Summary

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Official Symbol
Znf16l-ps1provided by RGD
Official Full Name
Zinc finger protein 16 like, pseudogene 1provided by RGD
Primary source
RGD:7613843
See related
AllianceGenome:RGD:7613843
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in several processes, including cellular response to sodium dodecyl sulfate; positive regulation of cell cycle phase transition; and positive regulation of myeloid cell differentiation. Predicted to be located in nucleolus and nucleoplasm. Orthologous to human ZNF16 (zinc finger protein 16). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Heart (RPKM 47.3), Muscle (RPKM 32.7) and 9 other tissues See more
Orthologs
human all
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Genomic context

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See Znf16l-ps1 in Genome Data Viewer
Location:
7q34
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (110531504..110550857, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (108650889..108670242, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (117991941..118009284, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L8 Neighboring gene zinc finger protein 647 Neighboring gene similar to human chromosome 8 open reading frame 33 Neighboring gene uncharacterized LOC134479933

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Identification and characterization of a novel zinc finger protein (HZF1) gene and its function in erythroid and megakaryocytic differentiation of K562 cells. Peng H, et al. Leukemia, 2006 Jun. PMID 16628192
  2. Zinc finger protein HZF1 promotes K562 cell proliferation by interacting with and inhibiting INCA1. Li XB, et al. Mol Med Rep, 2011 Nov-Dec. PMID 21874239

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Other Names

  • zinc finger protein 16
  • zinc finger protein 16-like

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in cellular response to sodium dodecyl sulfate ISO
Inferred from Sequence Orthology
more info
  
involved_in negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of cell cycle phase transition ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of erythrocyte differentiation ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of megakaryocyte differentiation ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_175277.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    110531504..110550857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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