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LOC102562002 alcohol dehydrogenase 1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 102562002, updated on 18-Sep-2024

Summary

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Gene symbol
LOC102562002
Gene description
alcohol dehydrogenase 1
Locus tag
Y1Q_0019471
See related
EnsemblRapid:ENSAMIG00015017518
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Also known as
ADH6; ADH1C
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Genomic context

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See LOC102562002 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 2 NC_081825.1 (160854959..160883939, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709954.1 (2729108..2758388)

Chromosome 2 - NC_081825.1Genomic Context describing neighboring genes Neighboring gene all-trans-retinol dehydrogenase [NAD(+)] ADH4 Neighboring gene alcohol dehydrogenase 1 Neighboring gene chromosome 2 C4orf17 homolog Neighboring gene tRNA methyltransferase 10A Neighboring gene microsomal triglyceride transfer protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables all-trans-retinol dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in retinoic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alcohol dehydrogenase 1
Names
alcohol dehydrogenase 1C (class I), gamma polypeptide
alcohol dehydrogenase 6 (class V)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081825.1 Reference rAllMis1 Primary Assembly

    Range
    160854959..160883939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006264505.4 → XP_006264567.1  alcohol dehydrogenase 1

    UniProtKB/Swiss-Prot
    P80222
    UniProtKB/TrEMBL
    A0A151NMD3
    Related
    ENSAMIP00015023634.1, ENSAMIT00015033166.1
    Conserved Domains (2) summary
    cd08299
    Location:3 → 375
    alcohol_DH_class_I_II_IV; class I, II, IV alcohol dehydrogenases
    COG1062
    Location:8 → 375
    FrmA; Zn-dependent alcohol dehydrogenase [General function prediction only]
Nucleotide Protein
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