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LOC102626585 xyloglucan endotransglucosylase/hydrolase protein 22-like [ Citrus sinensis (sweet orange) ]

Gene ID: 102626585, updated on 23-Nov-2023

Summary

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Gene symbol
LOC102626585
Gene description
xyloglucan endotransglucosylase/hydrolase protein 22-like
Locus tag
KPL70_027594
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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See LOC102626585 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
103 current DVS_A1.0 (GCF_022201045.2) 9 NC_068564.1 (32473464..32474811)
102 previous assembly Csi_valencia_1.0 (GCF_000317415.1) 4 NC_023049.1 (1602326..1603670, complement)

Chromosome 9 - NC_068564.1Genomic Context describing neighboring genes Neighboring gene NAC transcription factor 25-like Neighboring gene xyloglucan endotransglucosylase protein 1-like Neighboring gene xyloglucan endotransglucosylase/hydrolase protein 22-like Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 23 Neighboring gene xyloglucan endotransglucosylase/hydrolase protein 24-like Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan endotransglucosylase/hydrolase protein 22-like
Names
Xyloglucan endotransglucosylase/hydrolase protein 22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus sinensis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DVS_A1.0 Primary Assembly

Genomic

  1. NC_068564.1 Reference DVS_A1.0 Primary Assembly

    Range
    32473464..32474811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006474096.3 → XP_006474159.2  xyloglucan endotransglucosylase/hydrolase protein 22-like

Nucleotide Protein
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