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Gm13778 predicted gene 13778 [ Mus musculus (house mouse) ]

Gene ID: 102632821, updated on 22-Oct-2024

Summary

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Official Symbol
Gm13778provided by MGI
Official Full Name
predicted gene 13778provided by MGI
Primary source
MGI:MGI:3649233
See related
Ensembl:ENSMUSG00000086495 AllianceGenome:MGI:3649233
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in limb E14.5 (RPKM 1.7), testis adult (RPKM 1.4) and 26 other tissues See more
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Genomic context

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See Gm13778 in Genome Data Viewer
Location:
2 50.44 cM; 2 E1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (90874427..90884265, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (91031798..91054009, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase, mitochondrial 1 Neighboring gene STARR-seq mESC enhancer starr_05099 Neighboring gene CUGBP, Elav-like family member 1 Neighboring gene STARR-seq mESC enhancer starr_05101 Neighboring gene STARR-positive B cell enhancer mm9_chr2:90854051-90854352 Neighboring gene STARR-positive B cell enhancer ABC_E5944 Neighboring gene receptor-associated protein of the synapse Neighboring gene STARR-positive B cell enhancer ABC_E7840 Neighboring gene proteasome (prosome, macropain) 26S subunit, ATPase 3 Neighboring gene solute carrier family 39 (metal ion transporter), member 13 Neighboring gene predicted gene, 57833

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_190157.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL672241, AL691439
    Related
    ENSMUST00000144822.3

  2. NR_190158.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL672241, AL691439
    Related
    ENSMUST00000146633.9

  3. NR_190159.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL672241, AL691439
    Related
    ENSMUST00000359607.1

  4. NR_190160.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL691439
    Related
    ENSMUST00000359611.1

  5. NR_190161.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL691439
    Related
    ENSMUST00000359610.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    90874427..90884265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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