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Gm20642 predicted gene 20642 [ Mus musculus (house mouse) ]

Gene ID: 102634076, updated on 17-Aug-2024

Summary

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Official Symbol
Gm20642provided by MGI
Official Full Name
predicted gene 20642provided by MGI
Primary source
MGI:MGI:5313089
See related
AllianceGenome:MGI:5313089
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 7.0), cortex adult (RPKM 1.7) and 5 other tissues See more
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Genomic context

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See Gm20642 in Genome Data Viewer
Location:
14 B; 14 22.22 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (38930662..38971703)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (39214826..39249746)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene neuregulin 3 Neighboring gene STARR-seq mESC enhancer starr_36444 Neighboring gene predicted gene, 53854 Neighboring gene STARR-seq mESC enhancer starr_36445 Neighboring gene neuregulin 3, opposite strand Neighboring gene STARR-seq mESC enhancer starr_36446 Neighboring gene STARR-seq mESC enhancer starr_36447 Neighboring gene predicted gene, 31606 Neighboring gene uncharacterized LOC432842 Neighboring gene potassium channel modulatory factor 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    38930662..38971703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004938619.1 RNA Sequence

  2. XR_874530.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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