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1110002E22Rik RIKEN cDNA 1110002E22 gene [ Mus musculus (house mouse) ]

Gene ID: 102634333, updated on 2-Nov-2024

Summary

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Official Symbol
1110002E22Rikprovided by MGI
Official Full Name
RIKEN cDNA 1110002E22 geneprovided by MGI
Primary source
MGI:MGI:1915066
See related
Ensembl:ENSMUSG00000090066 AllianceGenome:MGI:1915066
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm2292; 100039528
Summary
Is expressed in female reproductive system; genitourinary system; mesonephros of female; ovary; and urinary system. Orthologous to human C4orf54 (chromosome 4 open reading frame 54). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in heart adult (RPKM 7.3), mammary gland adult (RPKM 1.5) and 5 other tissues See more
Orthologs
human all
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Genomic context

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See 1110002E22Rik in Genome Data Viewer
Location:
3 G3; 3 64.05 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (137768010..137787267)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (138062242..138081501)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9081 Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 Neighboring gene STARR-positive B cell enhancer ABC_E9226 Neighboring gene dual adaptor for phosphotyrosine and 3-phosphoinositides 1 Neighboring gene predicted gene, 19708 Neighboring gene STARR-seq mESC enhancer starr_09102 Neighboring gene STARR-positive B cell enhancer ABC_E6138 Neighboring gene STARR-positive B cell enhancer ABC_E3472 Neighboring gene STARR-positive B cell enhancer ABC_E1268 Neighboring gene STARR-positive B cell enhancer mm9_chr3:137680066-137680366 Neighboring gene predicted gene 5105 Neighboring gene STARR-seq mESC enhancer starr_09105 Neighboring gene predicted gene, 52617 Neighboring gene STARR-positive B cell enhancer mm9_chr3:137778444-137778744 Neighboring gene microsomal triglyceride transfer protein Neighboring gene STARR-seq mESC enhancer starr_09106 Neighboring gene STARR-positive B cell enhancer ABC_E3473 Neighboring gene tRNA methyltransferase 10A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification of anchor genes during kidney development defines ontological relationships, molecular subcompartments and regulatory pathways. Thiagarajan RD, et al. PLoS One, 2011 Feb 28. PMID 21386911, Free PMC Article
  2. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C4orf54 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370862.2 → NP_001357791.1  uncharacterized protein C4orf54 homolog

    Status: VALIDATED

    Source sequence(s)
    AC131122
    Consensus CDS
    CCDS89691.1
    UniProtKB/Swiss-Prot
    E0CYV9
    Conserved Domains (1) summary
    pfam15232
    Location:1604 → 1666
    DUF4585; Domain of unknown function (DUF4585)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    137768010..137787267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030252339.2 → XP_030108199.1  uncharacterized protein C4orf54 homolog isoform X1

    UniProtKB/Swiss-Prot
    E0CYV9
    Related
    ENSMUSP00000123851.2, ENSMUST00000163080.3
    Conserved Domains (1) summary
    pfam15232
    Location:1604 → 1666
    DUF4585; Domain of unknown function (DUF4585)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E0CYV9.1 GenPept UniProtKB/Swiss-Prot:E0CYV9

Gene LinkOut

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