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Lrrc78 leucine rich repeat containing 78 [ Mus musculus (house mouse) ]

Gene ID: 102635744, updated on 2-Nov-2024

Summary

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Official Symbol
Lrrc78provided by MGI
Official Full Name
leucine rich repeat containing 78provided by MGI
Primary source
MGI:MGI:5579435
See related
Ensembl:ENSMUSG00000099564 AllianceGenome:MGI:5579435
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm28729
Summary
Orthologous to human LRRC78P (leucine rich repeat containing 78, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in bladder adult (RPKM 6.0), testis adult (RPKM 2.1) and 5 other tissues See more
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Genomic context

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See Lrrc78 in Genome Data Viewer
Location:
9 E3.3; 9
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (96368040..96407643, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (96485987..96525852, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 51656 Neighboring gene STARR-positive B cell enhancer mm9_chr9:96378987-96379288 Neighboring gene STARR-seq mESC enhancer starr_24959 Neighboring gene ring finger protein 7 Neighboring gene STARR-seq mESC enhancer starr_24962 Neighboring gene STARR-seq mESC enhancer starr_24963 Neighboring gene ubiquitin domain containing 2 pseudogene Neighboring gene RAS p21 protein activator 2 Neighboring gene STARR-positive B cell enhancer mm9_chr9:96473690-96473991 Neighboring gene protein transport protein Sec61 subunit gamma-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC102635744

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370882.1 → NP_001357811.1  uncharacterized protein LOC102635744

    Status: PREDICTED

    Source sequence(s)
    AC161257
    Consensus CDS
    CCDS90644.1
    UniProtKB/TrEMBL
    A0A1B0GSW2
    Related
    ENSMUSP00000148097.2, ENSMUST00000190704.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    96368040..96407643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243952.2 → XP_030099812.1  uncharacterized protein LOC102635744 isoform X1

  2. XM_011242849.3 → XP_011241151.1  uncharacterized protein LOC102635744 isoform X1

    See identical proteins and their annotated locations for XP_011241151.1

  3. XM_006511607.2 → XP_006511670.1  uncharacterized protein LOC102635744 isoform X1

    See identical proteins and their annotated locations for XP_006511670.1

  4. XM_011242850.1 → XP_011241152.1  uncharacterized protein LOC102635744 isoform X2

    See identical proteins and their annotated locations for XP_011241152.1

  5. XM_006511609.2 → XP_006511672.1  uncharacterized protein LOC102635744 isoform X3

    See identical proteins and their annotated locations for XP_006511672.1

Nucleotide Protein
Heading Accession and Version

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