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Gm36199 predicted gene, 36199 [ Mus musculus (house mouse) ]

Gene ID: 102640029, updated on 22-Oct-2024

Summary

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Official Symbol
Gm36199provided by MGI
Official Full Name
predicted gene, 36199provided by MGI
Primary source
MGI:MGI:5595358
See related
Ensembl:ENSMUSG00000117427 AllianceGenome:MGI:5595358
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm36199 in Genome Data Viewer
Location:
17 A3.3; 17
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (29653792..29685053)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (29434818..29466079)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:29469332-29469441 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:29475389-29475661 Neighboring gene STARR-positive B cell enhancer ABC_E4202 Neighboring gene mitochondrial carrier 1 Neighboring gene STARR-positive B cell enhancer ABC_E5586 Neighboring gene STARR-positive B cell enhancer ABC_E7508 Neighboring gene STARR-positive B cell enhancer ABC_E10944 Neighboring gene FYVE, RhoGEF and PH domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_42277 Neighboring gene STARR-seq mESC enhancer starr_42278 Neighboring gene STARR-positive B cell enhancer ABC_E2478 Neighboring gene STARR-positive B cell enhancer ABC_E8664 Neighboring gene VISTA enhancer mm81 Neighboring gene STARR-positive B cell enhancer mm9_chr17:29574287-29574588 Neighboring gene predicted gene, 36486 Neighboring gene STARR-seq mESC enhancer starr_42287 Neighboring gene predicted gene, 26885 Neighboring gene VISTA enhancer mm755 Neighboring gene STARR-positive B cell enhancer ABC_E2479 Neighboring gene STARR-positive B cell enhancer ABC_E5587 Neighboring gene STARR-positive B cell enhancer ABC_E8946 Neighboring gene STARR-positive B cell enhancer ABC_E9949 Neighboring gene proviral integration site 1 Neighboring gene transmembrane 217B Neighboring gene transmembrane protein 217

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    29653792..29685053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_385508.3 RNA Sequence

    Related
    ENSMUST00000313103.1

  2. XR_385510.4 RNA Sequence

    Related
    ENSMUST00000313104.1

  3. XR_876720.3 RNA Sequence

  4. XR_004939697.1 RNA Sequence

  5. XR_004939698.1 RNA Sequence

  6. XR_385509.5 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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