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Gm36486 predicted gene, 36486 [ Mus musculus (house mouse) ]

Gene ID: 102640422, updated on 17-Aug-2024

Summary

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Official Symbol
Gm36486provided by MGI
Official Full Name
predicted gene, 36486provided by MGI
Primary source
MGI:MGI:5595645
See related
AllianceGenome:MGI:5595645
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in testis adult (RPKM 1.2), liver E14.5 (RPKM 0.4) and 17 other tissues See more
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Genomic context

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Location:
17 A3.3; 17
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (29649777..29656553, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (29430803..29437579, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:29469332-29469441 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:29475389-29475661 Neighboring gene STARR-positive B cell enhancer ABC_E4202 Neighboring gene mitochondrial carrier 1 Neighboring gene STARR-positive B cell enhancer ABC_E5586 Neighboring gene STARR-positive B cell enhancer ABC_E7508 Neighboring gene STARR-positive B cell enhancer ABC_E10944 Neighboring gene FYVE, RhoGEF and PH domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_42277 Neighboring gene STARR-seq mESC enhancer starr_42278 Neighboring gene STARR-positive B cell enhancer ABC_E2478 Neighboring gene STARR-positive B cell enhancer ABC_E8664 Neighboring gene VISTA enhancer mm81 Neighboring gene STARR-positive B cell enhancer mm9_chr17:29574287-29574588 Neighboring gene predicted gene, 36199 Neighboring gene STARR-seq mESC enhancer starr_42287 Neighboring gene predicted gene, 26885 Neighboring gene VISTA enhancer mm755 Neighboring gene STARR-positive B cell enhancer ABC_E2479 Neighboring gene STARR-positive B cell enhancer ABC_E5587 Neighboring gene STARR-positive B cell enhancer ABC_E8946 Neighboring gene STARR-positive B cell enhancer ABC_E9949 Neighboring gene proviral integration site 1 Neighboring gene transmembrane 217B Neighboring gene transmembrane protein 217

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Post-entrapment genome engineering: first exon size does not affect the expression of fusion transcripts generated by gene entrapment. Osipovich AB, et al. Genome Res, 2005 Mar. PMID 15741512, Free PMC Article
  2. Mutagenesis of diploid mammalian genes by gene entrapment. Lin Q, et al. Nucleic Acids Res, 2006. PMID 17062627, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    29649777..29656553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_876726.3 RNA Sequence

  2. XR_385517.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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