U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC102682553 WD repeat-containing protein 70 [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102682553, updated on 23-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC102682553
Gene description
WD repeat-containing protein 70
See related
Ensembl:ENSLOCG00000012656
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
wdr70
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC102682553 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_09 current fLepOcu1.hap2 (GCF_040954835.1) 3 NC_090698.1 (15689631..15801440)
101 previous assembly LepOcu1 (GCF_000242695.1) Linkage Group LG2 NC_023180.1 (53845911..53960070, complement)

Chromosome 3 - NC_090698.1Genomic Context describing neighboring genes Neighboring gene ciliogenesis and planar polarity effector 1 Neighboring gene nucleoporin 155 Neighboring gene olfactory receptor class A related 5 Neighboring gene glial cell line-derived neurotrophic factor Neighboring gene pikachurin

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
WD repeat-containing protein 70
Names
WD repeat domain 70

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_040954835.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLepOcu1.hap2

Genomic

  1. NC_090698.1 Reference fLepOcu1.hap2

    Range
    15689631..15801440
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006627289.3 → XP_006627352.2  WD repeat-containing protein 70 isoform X2

    UniProtKB/TrEMBL
    W5N4M6
    Conserved Domains (3) summary
    COG2319
    Location:129 → 489
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:182 → 226
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:174 → 495
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_015340380.2 → XP_015195866.1  WD repeat-containing protein 70 isoform X1

    UniProtKB/TrEMBL
    W5N4M6, W5N4N2
    Related
    ENSLOCP00000015591.1
    Conserved Domains (3) summary
    COG2319
    Location:130 → 490
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:183 → 227
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:175 → 496
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.