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LINC02636 long intergenic non-protein coding RNA 2636 [ Homo sapiens (human) ]

Gene ID: 102723350, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02636provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2636provided by HGNC
Primary source
HGNC:HGNC:54119
See related
AllianceGenome:HGNC:54119
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10q22.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (69985850..70009319, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (70854350..70878316, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378347 Neighboring gene collagen type XIII alpha 1 chain Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71602109-71602610 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71620307-71621012 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71626613-71627596 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71627597-71628580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71633165-71633944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71641515-71642236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71662663-71663262 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71664255-71664755 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3494 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2437 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71676315-71676994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71685663-71686162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71706107-71706606 Neighboring gene uncharacterized LOC107984242 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2438 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71721094-71721594 Neighboring gene macroH2A.2 histone Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71830815-71831314 Neighboring gene HNF4 motif-containing MPRA enhancer 70 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3495 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:71892372-71892872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71898399-71898899 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2440 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3496 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2441 Neighboring gene apoptosis inducing factor mitochondria associated 2 Neighboring gene trypsin like peroxisomal matrix peptidase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184064.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024601

  2. NR_184065.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024601

  3. NR_184066.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024601

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    69985850..70009319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    70854350..70878316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases