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LINC01440 long intergenic non-protein coding RNA 1440 [ Homo sapiens (human) ]

Gene ID: 102723578, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01440provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1440provided by HGNC
Primary source
HGNC:HGNC:50762
See related
AllianceGenome:HGNC:50762
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.4) See more
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Genomic context

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See LINC01440 in Genome Data Viewer
Location:
20q13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (55423043..55426791)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (57198083..57201831)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (54039581..54043329)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene RNA, U4atac small nuclear 7, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:53530679-53531178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:53700573-53701073 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr20:53719034-53719938 Neighboring gene NANOG hESC enhancer GRCh37_chr20:53746218-53746719 Neighboring gene MPRA-validated peak4279 silencer Neighboring gene ribosomal protein L12 pseudogene 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:54039521-54040195 Neighboring gene long intergenic non-protein coding RNA 1441 Neighboring gene Sharpr-MPRA regulatory region 10667 Neighboring gene uncharacterized LOC105372676 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:54153167-54154366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:54207780-54208291 Neighboring gene uncharacterized LOC107984001 Neighboring gene VISTA enhancer hs1448

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110629.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX107747, DB449830

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    55423043..55426791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    57198083..57201831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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