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LOC102723654 uncharacterized LOC102723654 [ Homo sapiens (human) ]

Gene ID: 102723654, updated on 22-Oct-2024

Summary

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Gene symbol
LOC102723654
Gene description
uncharacterized LOC102723654
See related
Ensembl:ENSG00000286274
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC102723654 in Genome Data Viewer
Location:
5q23.3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (129140209..129393928)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (129658905..129912668)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901060 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16298 Neighboring gene microRNA 4633 Neighboring gene isochorismatase domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:128499979-128500478 Neighboring gene uncharacterized LOC105379169 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_80935 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:128733796-128734784 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:128746164-128746707 Neighboring gene microRNA 4460 Neighboring gene NANOG hESC enhancer GRCh37_chr5:128784412-128784978 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:128794950-128795912 Neighboring gene ADAMTS19 antisense RNA 1 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. Comuzzie AG, et al. PLoS One, 2012. PMID 23251661, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    129140209..129393928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742463.2 RNA Sequence

  2. XR_001742465.2 RNA Sequence

  3. XR_427770.4 RNA Sequence

    Related
    ENST00000722822.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    129658905..129912668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075931.1 RNA Sequence

  2. XR_007075932.1 RNA Sequence

  3. XR_007075933.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials