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LOC102723722 uncharacterized LOC102723722 [ Homo sapiens (human) ]

Gene ID: 102723722, updated on 17-Sep-2024

Summary

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Gene symbol
LOC102723722
Gene description
uncharacterized LOC102723722
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Annotation information
Annotation category: only annotated on alternate loci and patches unit in reference assembly
Expression
Ubiquitous expression in liver (RPKM 6.3), testis (RPKM 5.1) and 25 other tissues See more
Orthologs
all
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Genomic context

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See LOC102723722 in Genome Data Viewer
Location:
22q13.2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 (ALT_REF_LOCI_3) NT_187682.1 (58185..59530)
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 (ALT_REF_LOCI_2) NW_004504305.1 (62824..72503)
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 (PATCHES) NW_015148968.1 (7630..29429)

NW_004504305.1Genomic Context describing neighboring genes Neighboring gene NDUFA6 divergent transcript Neighboring gene OLA1 pseudogene 1 Neighboring gene CYP2D6 promoter Neighboring gene cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42532244-42532832 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42532833-42533420 Neighboring gene cytochrome P450 family 2 subfamily D member 6 pseudogene

NT_187682.1Genomic Context describing neighboring genes Neighboring gene NDUFA6 divergent transcript Neighboring gene OLA1 pseudogene 1 Neighboring gene CYP2D6 promoter Neighboring gene cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42532244-42532832 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42532833-42533420 Neighboring gene cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene) Neighboring gene uncharacterized LOC105377203

NW_015148968.1Genomic Context describing neighboring genes Neighboring gene NDUFA6 divergent transcript Neighboring gene cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene) Neighboring gene CYP2D6 promoter Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42532244-42532832 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42532833-42533420 Neighboring gene cytochrome P450, subfamily IID (debrisoquine, sparteine, etc., -metabolising), polypeptide 7b (pseudogene) Neighboring gene cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene) Neighboring gene ccytochrome P450 family 2 subfamily D member 8, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations. Ji Y, et al. Br J Clin Pharmacol, 2014 Aug. PMID 24528284, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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EBI GWAS Catalog

Description
Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_015148968.1 Reference GRCh38.p14 PATCHES

    Range
    7630..29429
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069004.1 RNA Sequence

  2. XR_007068998.1 RNA Sequence

  3. XR_007068997.1 RNA Sequence

  4. XR_007068999.1 RNA Sequence

  5. XR_007069001.1 RNA Sequence

  6. XR_007069000.1 RNA Sequence

  7. XR_007069009.1 RNA Sequence

  8. XR_007069010.1 RNA Sequence

  9. XR_007069003.1 RNA Sequence

  10. XR_007069012.1 RNA Sequence

  11. XR_007069011.1 RNA Sequence

  12. XR_007069005.1 RNA Sequence

  13. XR_007069006.1 RNA Sequence

  14. XR_007069007.1 RNA Sequence

  15. XR_007069016.1 RNA Sequence

  16. XR_007069002.1 RNA Sequence

  17. XR_007069013.1 RNA Sequence

  18. XR_007069008.1 RNA Sequence

  19. XR_007069014.1 RNA Sequence

  20. XR_007069015.1 RNA Sequence

  21. XR_007068996.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NW_004504305.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    62824..72503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007068809.1 RNA Sequence

  2. XR_001756663.2 RNA Sequence

  3. XR_952545.3 RNA Sequence

  4. XR_952546.3 RNA Sequence

  5. XR_007068810.1 RNA Sequence

  6. XR_952542.3 RNA Sequence

  7. XR_952544.3 RNA Sequence

  8. XR_007068808.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NT_187682.1 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    58185..59530
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007068828.1 RNA Sequence

Nucleotide Protein
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