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LOC102724080 uncharacterized LOC102724080 [ Homo sapiens (human) ]

Gene ID: 102724080, updated on 17-Sep-2024

Summary

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Gene symbol
LOC102724080
Gene description
uncharacterized LOC102724080
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC102724080 in Genome Data Viewer
Location:
9q21.33
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (86413841..86531280)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (98565084..98604259)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:88927255-88928092 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:88942866-88943573 Neighboring gene terminal uridylyl transferase 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28516 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19997 Neighboring gene ribosomal protein S6 pseudogene 13 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr9:89025123-89025720 Neighboring gene RNA, U2 small nuclear 36, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28517 Neighboring gene uncharacterized LOC105376123 Neighboring gene NANOG hESC enhancer GRCh37_chr9:89230395-89230896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:89254374-89254874 Neighboring gene long intergenic non-protein coding RNA 2834

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    86413841..86531280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007061636.1 RNA Sequence

  2. XR_001746546.1 RNA Sequence

  3. XR_007061635.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    98565084..98604259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079678.1 RNA Sequence

  2. XR_007079679.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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