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ZNF337-AS1 ZNF337 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102724826, updated on 10-Oct-2023

Summary

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Official Symbol
ZNF337-AS1provided by HGNC
Official Full Name
ZNF337 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40759
See related
Ensembl:ENSG00000213742 AllianceGenome:HGNC:40759
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in endometrium (RPKM 5.1), lung (RPKM 4.9) and 25 other tissues See more
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Genomic context

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Location:
20p11.21
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (25624045..25678074)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (25689591..25743572)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (25604681..25658710)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene RNA, U6atac small nuclear 17, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:25603923-25604598 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17671 Neighboring gene N-acetylneuraminic acid phosphatase Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17672 Neighboring gene RNA, 7SL, cytoplasmic 594, pseudogene Neighboring gene mediator complex subunit 28 pseudogene 7 Neighboring gene zinc finger protein 337 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17673 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17674 Neighboring gene uncharacterized LOC107985400 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:25699573-25700088 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:25700089-25700604 Neighboring gene vomeronasal 1 receptor 108 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17675 Neighboring gene uncharacterized LOC105372582

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126465.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL031673, BC034569, BM907163

  2. NR_126466.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, contains two alternate internal exons, and differs in the 3' terminal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AL031673, CN421644

  3. NR_126467.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains entirely different exons than variant 1, but shares exons with variant 2. It is shorter than variant 1.
    Source sequence(s)
    AL031673, AL529206
    Related
    ENST00000420803.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    25624045..25678074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    25689591..25743572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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