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CEP250-AS1 CEP250 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102725201, updated on 10-Oct-2023

Summary

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Official Symbol
CEP250-AS1provided by HGNC
Official Full Name
CEP250 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40143
See related
AllianceGenome:HGNC:40143
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.9), spleen (RPKM 1.4) and 24 other tissues See more
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Genomic context

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See CEP250-AS1 in Genome Data Viewer
Location:
20q11.22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (35471655..35490982, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (37192549..37211874, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene GDF5 promoter region Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12857 Neighboring gene GDF5 antisense RNA 1 Neighboring gene growth differentiation factor 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17783 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17784 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12858 Neighboring gene microRNA 1289-1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12859 Neighboring gene centrosomal protein 250 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17785 Neighboring gene chromosome 20 open reading frame 173 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17786 Neighboring gene ERGIC and golgi 3 Neighboring gene ribosomal protein L36 pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184011.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FO393401

  2. NR_184012.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FO393401

  3. NR_184013.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FO393401

  4. NR_184014.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FO393401

  5. NR_184015.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FO393401

  6. NR_184016.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FO393401

  7. NR_184017.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FO393401

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    35471655..35490982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    37192549..37211874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases