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LRTM2 leucine rich repeats and transmembrane domains 2 [ Elephantulus edwardii (Cape elephant shrew) ]

Gene ID: 102877681, updated on 10-Mar-2024

Summary

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Gene symbol
LRTM2
Gene description
leucine rich repeats and transmembrane domains 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Elephantulus edwardii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Macroscelidea; Macroscelididae; Elephantulus
Orthologs
human mouse all
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Genomic context

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See LRTM2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current EleEdw1.0 (GCF_000299155.1) Unplaced Scaffold NW_006399846.1 (9100034..9106668, complement)

NW_006399846.1Genomic Context describing neighboring genes Neighboring gene decapping mRNA 1B Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 4 Neighboring gene cell division cycle 5-like protein-like Neighboring gene tubulin alpha-4A chain-like Neighboring gene adiponectin receptor 2 Neighboring gene chloride intracellular channel 1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006399846 unplaced scaffold reference EleEdw1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and transmembrane domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Elephantulus edwardii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EleEdw1.0

Genomic

  1. NW_006399846.1 Reference EleEdw1.0

    Range
    9100034..9106668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006891313.1 → XP_006891375.1  leucine-rich repeat and transmembrane domain-containing protein 2

    Conserved Domains (4) summary
    smart00013
    Location:38 → 70
    LRRNT; Leucine rich repeat N-terminal domain
    cd00116
    Location:87 → 205
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:94 → 117
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:92 → 152
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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