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PARPBP PARP1 binding protein [ Balaenoptera acutorostrata (minke whale) ]

Gene ID: 103016073, updated on 11-Mar-2024

Summary

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Gene symbol
PARPBP
Gene description
PARP1 binding protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera acutorostrata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human mouse all
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Genomic context

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See PARPBP in Genome Data Viewer
Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_06 current mBalAcu1.1 (GCF_949987535.1) 11 NC_080074.1 (20083698..20164646, complement)
101 previous assembly BalAcu1.0 (GCF_000493695.1) Unplaced Scaffold NW_006725354.1 (9582861..9662610, complement)

Chromosome 11 - NC_080074.1Genomic Context describing neighboring genes Neighboring gene insulin like growth factor 1 Neighboring gene reticulon-3-like Neighboring gene pro-melanin concentrating hormone Neighboring gene nucleoporin 37 Neighboring gene WASH complex subunit 3 Neighboring gene ankyrin repeat and SOCS box protein 11-like Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene DNA damage regulated autophagy modulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PCNA-interacting partner

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949987535.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalAcu1.1

Genomic

  1. NC_080074.1 Reference mBalAcu1.1

    Range
    20083698..20164646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057556983.1 → XP_057412966.1  PCNA-interacting partner isoform X4

  2. XM_057556981.1 → XP_057412964.1  PCNA-interacting partner isoform X2

  3. XM_007165786.3 → XP_007165848.1  PCNA-interacting partner isoform X1

    UniProtKB/TrEMBL
    A0A383YSM0
    Conserved Domains (1) summary
    cl02776
    Location:239 → 266
    GST_C_family; C-terminal, alpha helical domain of the Glutathione S-transferase family

  4. XM_057556982.1 → XP_057412965.1  PCNA-interacting partner isoform X3

  5. XM_057556984.1 → XP_057412967.1  PCNA-interacting partner isoform X5

RNA

  1. XR_009009748.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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