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spaw southpaw [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103023108, updated on 6-Jun-2024

Summary

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Gene symbol
spaw
Gene description
southpaw
See related
EnsemblRapid:ENSAMXG00025027581
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
zebrafish all
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Genomic context

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See spaw in Genome Data Viewer
Location:
chromosome: 22
Exon count:
3
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 22 NC_064429.1 (1355988..1360182)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) Unplaced Scaffold NW_019172865.1 (89312..93492)

Chromosome 22 - NC_064429.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 39 Neighboring gene surfactant protein Bb Neighboring gene ankyrin 1, erythrocytic a Neighboring gene EBF transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type I activin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
southpaw
Names
nodal homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064429.1 Reference AstMex3_surface

    Range
    1355988..1360182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007236194.4 → XP_007236256.4  southpaw

    UniProtKB/TrEMBL
    A0A8B9J9Q6, W5LPJ6
    Related
    ENSAMXP00025045150.1, ENSAMXT00025057698.1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases