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usp39 ubiquitin specific peptidase 39 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103044993, updated on 10-Oct-2024

Summary

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Gene symbol
usp39
Gene description
ubiquitin specific peptidase 39
See related
EnsemblRapid:ENSAMXG00025027271
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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See usp39 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
13
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 22 NC_064429.1 (1329700..1339655)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) Unplaced Scaffold NW_019172865.1 (63167..73102)

Chromosome 22 - NC_064429.1Genomic Context describing neighboring genes Neighboring gene methionine adenosyltransferase 2Ab Neighboring gene chromosome 22 C2orf68 homolog Neighboring gene surfactant protein Bb Neighboring gene southpaw

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U4/U6.U5 tri-snRNP-associated protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064429.1 Reference AstMex3_surface

    Range
    1329700..1339655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049470459.1 → XP_049326416.1  U4/U6.U5 tri-snRNP-associated protein 2

    UniProtKB/TrEMBL
    A0A3B1K6D0, A0A8B9HG57
    Related
    ENSAMXP00025044934.1, ENSAMXT00025057482.1
Nucleotide Protein
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