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LINC01145 long intergenic non-protein coding RNA 1145 [ Homo sapiens (human) ]

Gene ID: 103091866, updated on 2-Nov-2024

Summary

Official Symbol
LINC01145provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1145provided by HGNC
Primary source
HGNC:HGNC:49462
See related
AllianceGenome:HGNC:49462
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable triplet codon-amino acid adaptor activity. Predicted to be involved in translation. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in spleen (RPKM 7.1), lymph node (RPKM 6.0) and 25 other tissues See more
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Genomic context

See LINC01145 in Genome Data Viewer
Location:
1q21.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (145164099..145216052, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (144288808..144340787, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (143743239..143744617, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:149294067-149294575 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:149293556-149294066 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene RNA, U1 small nuclear 153, pseudogene Neighboring gene tRNA-Glu (anticodon TTC) 10-1 Neighboring gene uncharacterized LOC100996740 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1258 Neighboring gene VOPP1, WBP1/VOPP1 family member pseudogene Neighboring gene peptidylprolyl isomerase A like 4D

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • protein FAM231D

Clone Names

  • FLJ41668, FLJ42559, FLJ97060, FLJ99375

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables triplet codon-amino acid adaptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_111954.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC241585
  2. NR_111955.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC241585
  3. NR_111956.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC241585
  4. NR_111957.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC241585
  5. NR_111958.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC241585
  6. NR_156689.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC241585
  7. NR_156690.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC241585
  8. NR_156691.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC241585

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    145164099..145216052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    144288808..144340787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)