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esr1 estrogen receptor 1 [ Poecilia reticulata (guppy) ]

Gene ID: 103457510, updated on 19-Jun-2024

Summary

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Gene symbol
esr1
Gene description
estrogen receptor 1
See related
Ensembl:ENSPREG00000004110
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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See esr1 in Genome Data Viewer
Location:
chromosome: LG21
Exon count:
10
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG21 NC_024351.1 (8896131..8911937)

Linkage Group LG21 - NC_024351.1Genomic Context describing neighboring genes Neighboring gene A kinase (PRKA) anchor protein 12b Neighboring gene zinc finger and BTB domain containing 2b Neighboring gene acidic residue methyltransferase 1 Neighboring gene spectrin repeat containing, nuclear envelope 1a Neighboring gene myc target 1a Neighboring gene serine active site containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024351.1 Chromosome LG21 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear estrogen receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in steroid hormone receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
estrogen receptor
Names
estrogen receptor alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001297487.1 → NP_001284416.1  estrogen receptor

    See identical proteins and their annotated locations for NP_001284416.1

    Status: PROVISIONAL

    Source sequence(s)
    AB621910
    UniProtKB/TrEMBL
    A0A3P9N8X8, G1UI42
    Related
    ENSPREP00000006015.1, ENSPRET00000006097.1
    Conserved Domains (3) summary
    cd06949
    Location:316 → 553
    NR_LBD_ER; Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen)
    cd07171
    Location:187 → 266
    NR_DBD_ER; DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers
    cl23807
    Location:48 → 188
    WWbp; WW-domain ligand protein

RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024351.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    8896131..8911937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008397690.2 → XP_008395912.1  estrogen receptor isoform X1

    See identical proteins and their annotated locations for XP_008395912.1

    UniProtKB/TrEMBL
    A0A3P9N8X8
    Conserved Domains (3) summary
    cd06949
    Location:316 → 553
    NR_LBD_ER; Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen)
    cd07171
    Location:187 → 266
    NR_DBD_ER; DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers
    cl23807
    Location:48 → 188
    WWbp; WW-domain ligand protein

  2. XM_008397691.2 → XP_008395913.1  estrogen receptor isoform X1

    See identical proteins and their annotated locations for XP_008395913.1

    UniProtKB/TrEMBL
    A0A3P9N8X8
    Conserved Domains (3) summary
    cd06949
    Location:316 → 553
    NR_LBD_ER; Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen)
    cd07171
    Location:187 → 266
    NR_DBD_ER; DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers
    cl23807
    Location:48 → 188
    WWbp; WW-domain ligand protein
Nucleotide Protein
Heading Accession and Version

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