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LOC103690796 60S ribosomal protein L9-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 103690796, updated on 2-Nov-2024

Summary

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Symbol
LOC103690796provided by RGD
Full Name
60S ribosomal protein L9-likeprovided by RGD
Primary source
RGD:9453398
See related
EnsemblRapid:ENSRNOG00000065924 AllianceGenome:RGD:9453398
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1559566
Summary
Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Spleen (RPKM 1328.1), Thymus (RPKM 1167.8) and 9 other tissues See more
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Genomic context

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See LOC103690796 in Genome Data Viewer
Location:
Xq11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (3939713..3940382)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (1386183..1386826)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (1600799..1601432)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L22 like 1, pseudogene 1 Neighboring gene prothymosin alpha like 1 Neighboring gene zinc finger protein 157-like Neighboring gene GTP binding protein 4, pseudogene 2 Neighboring gene ubiquitin specific peptidase 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
large ribosomal subunit protein uL6-like
Names
60S ribosomal protein L9 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    3939713..3940382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039100279.2 → XP_038956207.1  large ribosomal subunit protein uL6-like

    UniProtKB/TrEMBL
    A0A8I6AHN0, Q6P9U5
    Related
    ENSRNOP00000092772.1, ENSRNOT00000096576.2
    Conserved Domains (1) summary
    cl30086
    Location:1 → 190
    Ribosomal_L6; Ribosomal protein L6
Nucleotide Protein Strain
Heading Accession and Version

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