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Lnc134 long non-coding RNA 134 [ Rattus norvegicus (Norway rat) ]

Gene ID: 103691906, updated on 17-Aug-2024

Summary

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Symbol
Lnc134provided by RGD
Full Name
long non-coding RNA 134provided by RGD
Primary source
RGD:9078385
See related
AllianceGenome:RGD:9078385
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
lncSN134
Summary
The long RNA produced from this gene shows differential day versus night expression in the pineal gland. Alternative splicing results in multiple transcript variants, though the full-length structure of some of these variants is not known. [provided by RefSeq, Dec 2014]
Expression
Biased expression in Kidney (RPKM 47.7), Muscle (RPKM 43.0) and 9 other tissues See more
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Genomic context

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See Lnc134 in Genome Data Viewer
Location:
13q13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (48446967..48451885, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (45894964..45899883, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (51275947..51280865, complement)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120096190 Neighboring gene cytochrome b5 reductase 1 Neighboring gene adiponectin receptor 1 Neighboring gene kelch-like family member 12 Neighboring gene NADH:ubiquinone oxidoreductase subunit V3, pseudogene 1 Neighboring gene uncharacterized LOC134481560

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Circadian changes in long noncoding RNAs in the pineal gland. Coon SL, et al. Proc Natl Acad Sci U S A, 2012 Aug 14. PMID 22864914, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • long non-coding RNA SN134

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126577.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    JAXUCZ010000013

  2. NR_126578.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    FM099976, JAXUCZ010000013

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    48446967..48451885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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