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Eif3e-ps1 eukaryotic translation initiation factor 3 subunit E, pseudogene 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 103692906, updated on 28-Oct-2024

Summary

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Official Symbol
Eif3e-ps1provided by RGD
Official Full Name
eukaryotic translation initiation factor 3 subunit E, pseudogene 1provided by RGD
Primary source
RGD:9273439
See related
AllianceGenome:RGD:9273439
Gene type
pseudo
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Eif3e
Summary
Orthologous to human EIF3E (eukaryotic translation initiation factor 3 subunit E). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in Thymus (RPKM 12.5), Spleen (RPKM 11.6) and 9 other tissues See more
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Genomic context

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See Eif3e-ps1 in Genome Data Viewer
Location:
7q31
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (77142058..77150293, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (75257366..75265601, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (82997694..83037231, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134479720 Neighboring gene thyrotropin releasing hormone receptor Neighboring gene small nucleolar RNA SNORA17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Eukaryotic translation initiation factor 3 subunit e controls intracellular calcium homeostasis by regulation of cav1.2 surface expression. Buda P, et al. PLoS One, 2013. PMID 23737983, Free PMC Article
  2. Silencing of int6 gene restores function of the ischaemic hindlimb in a rat model of peripheral arterial disease. Okamoto N, et al. Cardiovasc Res, 2011 Nov 1. PMID 21771896
  3. Int6 silencing causes induction of angiogenic factors in neuronal cells via accumulation of hypoxia-inducible factor 2α and decreases brain damage in rats. Miyashita R, et al. Neurosci Lett, 2012 Oct 18. PMID 22960363
  4. The translation initiation factor eIF3-p48 subunit is encoded by int-6, a site of frequent integration by the mouse mammary tumor virus genome. Asano K, et al. J Biol Chem, 1997 Sep 19. PMID 9295280
  5. Interaction between the Ret finger protein and the Int-6 gene product and co-localisation into nuclear bodies. Morris-Desbois C, et al. J Cell Sci, 1999 Oct. PMID 10504338

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • eukaryotic translation initiation factor 3, subunit E

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_079422.1 

    Range
    101..8336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    77142058..77150293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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