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LOC103759554 vitellogenin-1-like [ Manacus vitellinus (golden-collared manakin) ]

Gene ID: 103759554, updated on 3-Aug-2024

Summary

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Gene symbol
LOC103759554
Gene description
vitellogenin-1-like
See related
Ensembl:ENSMVIG00005020006
Gene type
protein coding
RefSeq status
MODEL
Organism
Manacus vitellinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Manacus
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Genomic context

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See LOC103759554 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
103 current ASM171598v3 (GCF_001715985.3) Unplaced Scaffold NW_021940737.1 (2059495..2102821)
101 previous assembly ASM171598v1 (GCF_001715985.1) Unplaced Scaffold NW_017220225.1 (2167465..2210805)

NW_021940737.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108641527 Neighboring gene adhesion G protein-coupled receptor L2 Neighboring gene adhesion G protein-coupled receptor L4 Neighboring gene prostaglandin F receptor Neighboring gene GIPC PDZ domain containing family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vitellogenin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manacus vitellinus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM171598v3

Genomic

  1. NW_021940737.1 Reference ASM171598v3

    Range
    2059495..2102821
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018083735.3 → XP_017939224.3  vitellogenin-1-like

    Conserved Domains (4) summary
    smart00216
    Location:1627 → 1792
    VWD; von Willebrand factor (vWF) type D domain
    pfam01347
    Location:24 → 592
    Vitellogenin_N; Lipoprotein amino terminal region
    pfam09172
    Location:626 → 909
    DUF1943; Domain of unknown function (DUF1943)
    pfam09175
    Location:1436 → 1600
    DUF1944; Domain of unknown function (DUF1944)
Nucleotide Protein
Heading Accession and Version