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PTPN13 protein tyrosine phosphatase non-receptor type 13 [ Acanthisitta chloris (rifleman) ]

Gene ID: 103812239, updated on 3-Aug-2024

Summary

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Gene symbol
PTPN13
Gene description
protein tyrosine phosphatase non-receptor type 13
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthisitta chloris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Acanthisittidae; Acanthisitta
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See PTPN13 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
44
Annotation release Status Assembly Chr Location
100 current ASM69581v1 (GCF_000695815.1) Unplaced Scaffold NW_008658867.1 (301..91390, complement)

NW_008658867.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008658867.1 Unplaced Scaffold Reference ASM69581v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol 3-kinase regulatory subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-tyrosine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosine-protein phosphatase non-receptor type 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthisitta chloris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69581v1

Genomic

  1. NW_008658867.1 Reference ASM69581v1

    Range
    301..91390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009085249.1 → XP_009083497.1  tyrosine-protein phosphatase non-receptor type 13

    Conserved Domains (10) summary
    smart00194
    Location:2247 → 2394
    PTPc; Protein tyrosine phosphatase, catalytic domain
    smart00228
    Location:1507 → 1598
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    smart00295
    Location:573 → 781
    B41; Band 4.1 homologues
    smart00750
    Location:3 → 186
    KIND; kinase non-catalytic C-lobe domain
    cd00047
    Location:2272 → 2394
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd00992
    Location:1788 → 1867
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam00373
    Location:668 → 781
    FERM_M; FERM central domain
    pfam09379
    Location:576 → 638
    FERM_N; FERM N-terminal domain
    pfam16599
    Location:1180 → 1370
    PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
    cl17171
    Location:777 → 877
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
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