U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CAPN9 calpain 9 [ Pelecanus crispus (Dalmatian pelican) ]

Gene ID: 104039163, updated on 12-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CAPN9
Gene description
calpain 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelecanus crispus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Pelecanidae; Pelecanus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CAPN9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM68737v1 (GCF_000687375.1) Unplaced Scaffold NW_009068392.1 (39798..51657, complement)

NW_009068392.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown open reading frame, human C1orf198

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_009068392.1 Unplaced Scaffold Reference ASM68737v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: calpain-9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pelecanus crispus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68737v1

Genomic

  1. NW_009068392.1 Reference ASM68737v1

    Range
    39798..51657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009493744.1 → XP_009492019.1  LOW QUALITY PROTEIN: calpain-9

    Conserved Domains (3) summary
    pfam01067
    Location:31 → 171
    Calpain_III; Calpain large subunit, domain III
    cl00051
    Location:1 → 24
    CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    cl08302
    Location:247 → 302
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.