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RAG1 recombination activating 1 [ Tyto alba (common barn owl) ]

Gene ID: 104355454, updated on 3-Aug-2024

Summary

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Gene symbol
RAG1
Gene description
recombination activating 1
Locus tag
N341_04084
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Also known as
RAG-1
Orthologs
human mouse all
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Genomic context

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See RAG1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881280.1 (1241943..1245053)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009976758.1 (10029..13139, complement)

NW_024881280.1Genomic Context describing neighboring genes Neighboring gene proline rich 5 like Neighboring gene TNF receptor associated factor 6 Neighboring gene recombination activating 2 Neighboring gene intraflagellar transport associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in V(D)J recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in adaptive immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pre-B cell allelic exclusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA recombinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of endodeoxyribonuclease complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V(D)J recombination-activating protein 1
Names
recombination activating protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881280.1 Reference T.alba_DEE_v4.0

    Range
    1241943..1245053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009975325.3 → XP_009973627.2  V(D)J recombination-activating protein 1

    UniProtKB/TrEMBL
    A0A109RXZ1
    Conserved Domains (4) summary
    pfam10426
    Location:346 → 375
    zf-RAG1; Recombination-activating protein 1 zinc-finger domain
    pfam12940
    Location:380 → 1015
    RAG1; Recombination-activation protein 1 (RAG1), recombinase
    cd16530
    Location:281 → 326
    RING-HC_RAG1; RING finger, HC subclass, found in recombination activating gene-1 (RAG-1) and similar proteins
    pfam12560
    Location:7 → 282
    RAG1_imp_bd; RAG1 importin binding
Nucleotide Protein
Heading Accession and Version

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