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SALRNA2 senescence associated long non-coding RNA 2 [ Homo sapiens (human) ]

Gene ID: 104548973, updated on 10-Oct-2023

Summary

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Official Symbol
SALRNA2provided by HGNC
Official Full Name
senescence associated long non-coding RNA 2provided by HGNC
Primary source
HGNC:HGNC:49003
See related
Ensembl:ENSG00000280515 AllianceGenome:HGNC:49003
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SAL-RNA2; XLOC_025931
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Genomic context

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See SALRNA2 in Genome Data Viewer
Location:
15q23
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (70635249..70637314)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (68458040..68460105)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (70927588..70929653)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70871773-70872576 Neighboring gene long intergenic non-protein coding RNA 2204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70877919-70878863 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70895028-70895528 Neighboring gene FOXA motif-containing MPRA enhancer 168 Neighboring gene senescence associated long non-coding RNA 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:70925493-70926031 Neighboring gene uncharacterized LOC107984791 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:70927977-70928121 Neighboring gene uveal autoantigen with coiled-coil domains and ankyrin repeats Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:71002570-71003070 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:71005595-71006134 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:71010983-71011484 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6609 Neighboring gene ribosomal protein L29 pseudogene 30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Senescence-associated lncRNAs: senescence-associated long noncoding RNAs. Abdelmohsen K, et al. Aging Cell, 2013 Oct. PMID 23758631, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126482.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087699
    Related
    ENST00000629082.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    70635249..70637314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    68458040..68460105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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