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LOC104877881 mediator of RNA polymerase II transcription subunit 15a [ Vitis vinifera (wine grape) ]

Gene ID: 104877881, updated on 23-Oct-2023

Summary

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Gene symbol
LOC104877881
Gene description
mediator of RNA polymerase II transcription subunit 15a
Locus tag
VIT_00012462001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC104877881 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 13 NC_081817.1 (19527462..19534079, complement)
102 previous assembly 12X (GCF_000003745.3) 13 Unlocalized Scaffold NW_003724178.1 (1193366..1200005)

Chromosome 13 - NC_081817.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 15a Neighboring gene uncharacterized LOC104877894 Neighboring gene pentatricopeptide repeat-containing protein At1g11290, chloroplastic Neighboring gene uncharacterized LOC132254908

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 15a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081817.1 Reference ASM3070453v1 Primary Assembly

    Range
    19527462..19534079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010647250.3 → XP_010645552.1  mediator of RNA polymerase II transcription subunit 15a isoform X1

    Conserved Domains (1) summary
    pfam16987
    Location:42 → 106
    KIX_2; KIX domain

  2. XM_059741540.1 → XP_059597523.1  mediator of RNA polymerase II transcription subunit 15a isoform X2

Nucleotide Protein
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