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josd1 Josephin domain containing 1 [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104968327, updated on 12-Mar-2024

Summary

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Gene symbol
josd1
Gene description
Josephin domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Orthologs
human zebrafish all
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Genomic context

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See josd1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011335324.1 (10381..24481)

NW_011335324.1Genomic Context describing neighboring genes Neighboring gene chromobox homolog 7b Neighboring gene uncharacterized LOC104968274 Neighboring gene GTPase IMAP family member 4-like Neighboring gene uncharacterized LOC104968281 Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 6 Neighboring gene uncharacterized LOC104968328 Neighboring gene desumoylating isopeptidase 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011335324.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
josephin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011335324.1 Reference NC01 Primary Assembly

    Range
    10381..24481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010797902.1 → XP_010796204.1  josephin-1

    UniProtKB/TrEMBL
    A0A6I9Q828
    Conserved Domains (1) summary
    pfam02099
    Location:18 → 106
    Josephin; Josephin
Nucleotide Protein
Heading Accession and Version

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