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Gm41590 predicted gene, 41590 [ Mus musculus (house mouse) ]

Gene ID: 105246286, updated on 17-Aug-2024

Summary

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Official Symbol
Gm41590provided by MGI
Official Full Name
predicted gene, 41590provided by MGI
Primary source
MGI:MGI:5624475
See related
AllianceGenome:MGI:5624475
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in thymus adult (RPKM 1.7), spleen adult (RPKM 0.9) and 5 other tissues See more
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Genomic context

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See Gm41590 in Genome Data Viewer
Location:
17 C; 17
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (47849338..47857282, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (47539141..47546357, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene ciliary microtubule inner protein 3 Neighboring gene STARR-seq mESC enhancer starr_42703 Neighboring gene expressed sequence AI661453 Neighboring gene STARR-positive B cell enhancer ABC_E9168 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47641447-47641630 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47641910-47642097 Neighboring gene STARR-positive B cell enhancer ABC_E5616 Neighboring gene STARR-seq mESC enhancer starr_42710 Neighboring gene TATA-box binding protein associated factor 8 Neighboring gene STARR-positive B cell enhancer ABC_E10958 Neighboring gene VISTA enhancer mm1691 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47668330-47668738 Neighboring gene cyclin D3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47679075-47679320 Neighboring gene STARR-seq mESC enhancer starr_42717 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47732923-47733032 Neighboring gene STARR-positive B cell enhancer ABC_E9169 Neighboring gene bystin-like Neighboring gene predicted gene 20517 Neighboring gene Kpna2 retrotransposed pseudogene Neighboring gene mediator complex subunit 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    47849338..47857282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_876848.4 RNA Sequence

  2. XR_004939730.1 RNA Sequence

  3. XR_004939729.1 RNA Sequence

  4. XR_004939731.1 RNA Sequence

  5. XR_004939732.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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