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LOC105370182 uncharacterized LOC105370182 [ Homo sapiens (human) ]

Gene ID: 105370182, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105370182
Gene description
uncharacterized LOC105370182
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105370182 in Genome Data Viewer
Location:
13q14.11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (43986578..44015612, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (43206358..43235389, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 122 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5302 Neighboring gene laccase domain containing 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7670 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5303 Neighboring gene diacylglycerol kinase zeta pseudogene 1 Neighboring gene non-coding RNA in the aldehyde dehydrogenase 1A pathway Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:44653586-44654467 Neighboring gene long intergenic non-protein coding RNA 390 Neighboring gene SMIM2 antisense RNA 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:44715242-44716201 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5304 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:44717815-44718009 Neighboring gene SMIM2 intronic transcript 1 Neighboring gene small integral membrane protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    43986578..44015612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007063775.1 RNA Sequence

  2. XR_941918.3 RNA Sequence

  3. XR_007063774.1 RNA Sequence

  4. XR_007063776.1 RNA Sequence

  5. XR_941920.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    43206358..43235389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007084060.1 RNA Sequence

  2. XR_007084058.1 RNA Sequence

  3. XR_007084059.1 RNA Sequence

  4. XR_007084062.1 RNA Sequence

  5. XR_007084061.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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