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TRD-AS1 TRD antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105370401, updated on 10-Oct-2023

Summary

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Official Symbol
TRD-AS1provided by HGNC
Official Full Name
TRD antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56197
See related
Ensembl:ENSG00000251002
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See TRD-AS1 in Genome Data Viewer
Location:
14q11.2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (22379405..22482959, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (16577163..16680711, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (22847808..22951948, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene T cell receptor alpha locus Neighboring gene translin associated factor X pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8113 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:22856413-22856913 Neighboring gene T cell receptor alpha variable 41 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8115 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:22916943-22917478 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8116 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:22931886-22933085 Neighboring gene H3K4me1 hESC enhancers GRCh37_chr14:22940183-22940684 and GRCh37_chr14:22940685-22941184 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5584 Neighboring gene T cell receptor delta variable 2 Neighboring gene T cell receptor delta diversity 2 Neighboring gene T cell receptor delta diversity 1 Neighboring gene T cell receptor delta diversity 3 Neighboring gene T cell receptor delta locus Neighboring gene T cell receptor delta joining 1 Neighboring gene T cell receptor delta joining 4 Neighboring gene T cell receptor delta joining 2 Neighboring gene T cell receptor delta joining 3 Neighboring gene T cell receptor alpha joining 61 (non-functional) Neighboring gene T cell receptor alpha joining 60 (pseudogene) Neighboring gene T cell receptor alpha joining 59 (non-functional) Neighboring gene T cell receptor alpha joining 58 (non-functional) Neighboring gene T cell receptor alpha joining 57 Neighboring gene T cell receptor alpha joining 56 Neighboring gene T cell receptor delta variable 3 Neighboring gene T cell receptor alpha joining 55 (pseudogene) Neighboring gene T cell receptor alpha joining 54 Neighboring gene T cell receptor alpha joining 53 Neighboring gene T cell receptor alpha joining 52 Neighboring gene T cell receptor delta constant

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • FLJ36233

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_148361.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244502, AK093552

  2. NR_148362.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244502, DA946503, HY067100
    Related
    ENST00000541008.6

  3. NR_148363.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244502, HY067100

  4. NR_148364.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244502, DB148533, HY067100
    Related
    ENST00000537850.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    22379405..22482959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    16577163..16680711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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